2024
A. Woodhouse*, A Swain*, J A Smith*, E C Sibert*, A R Lam*, J A Dunne*, A Auderset*, “Micropaleoecology in a changing world: Combining microfossils and paleoenvironmental proxies provides unique insights into ecological response to global change” Ecology and Evolution 14(11), e70470 (*all authors contributed equally)
S K Mohapatra*, A Swain*, D Ray, R K Behera, B Acharya, J K Seth, and A Mohapatra, “Niche partitioning and host specialisation in fish-parasitizing isopods: trait-dependent patterns from three ecosystems on the east coast of India” Ecology and Evolution 14(9), e70298 (2024) (*equal contributions)
R J Knecht*, J S Benner*, A Swain, L E Azevedo-Schmidt, C J Cleal, C C Labandeira, M S Engel, J A Dunlop, P A Selden, C F Eble, M D Renczkowski, D A Wheeler#, M M Funderburk#, A H Knoll, and N E Pierce, “Early Pennsylvanian Lagerstätte reveals an exceptionally diverse ecosystem on a subhumid, alluvial fan” Nature Communications 15:7876 (2024) (*equal contributions) (#Undergraduate mentee)
A Swain, A J Kaufman, M Kalinowski#, S A Yaarwood, and W F Fagan, “Were Neoarchean atmospheric methane hazes and early Paleoproterozoic glaciations driven by the rise of oxygen in surface environments?” Earth and Planetary Science Letters 643:118900 (2024) (#Undergraduate mentee)
A Swain*, L E Azevedo-Schmidt*, S A Maccraken, E D Currano, E K Meineke, N E Pierce, W F Fagan, and C C Labandeira, “Temperature and insect herbivory: Integrating insights from paleo- and modern ecology”, The American Naturalist (2024) (*equal contributions)
K Savi, B Pandey, A Swain, J Lim, D Callo-Concha, G R Azondekon, M Wahjib, and C Borgemeister, “Urbanization and malaria have a contextual relationship in endemic areas: a temporal and spatial study”, PLoS Global Public Health 4(5): e0002871 (2024)
S K Mohapatra, A Swain, S Roy, B Tripathy, A Mohapatra, and J K Seth, “Low diversity, high dominance, and high host prevalence of parasitic isopods of the family Cymothoidae in Chilika lagoon, India: a comparative study between a semi-enclosed ecosystem and its adjoining open region”, Parasitology Research 123(4), 1-6 (2024)
A Swain*, A Woodhouse*, W F Fagan, A J Fraass, and C M Lowery, “Biogeographic response of marine plankton to Cenozoic environmental changes”, Nature (2024) (*equal contributions)
2023
R J Knecht, A Swain, J S Benner, S L Emma, N E Pierce, and C C Labandeira, “Endophytic ancestors of modern leaf miners may have evolved in the Late Carboniferous”, New Phytologist (2023)
A Swain, “Drivers of herbivore diversity decoupled by leveraging the fossil record”, Proceedings of the National Academy of Sciences of the USA 120 (34) e2311010120 (2023)
L E Azevedo-Schmidt, A Swain, L Shoemaker, and E D Currano, “Landscape-level variability and insect herbivore outbreak captured within modern forests provides a framework for interpreting the fossil record”, Scientific Reports 13, 9701 (2023)
A Woodhouse*, A Swain*, W F Fagan, A J Fraass, and C M Lowery, “Late Cenozoic climate cooling restructured global marine microplankton ecological communities”, Nature 614, pp. 713–718 (*equal contributions) (2023)
A Swain, L E Azevedo-Schmidt, S A Maccraken, E D Currano, J Dunne, C C Labandeira and W F Fagan, “Effects of sampling bias on robustness of ecological metrics of plant-damage type association networks”, Ecology e3922 (2023).
2022
A Swain, M Shofner, W F Fagan, and G Marbach-Ad, “Exploring the impact of peer-to-peer interactions on learning and course performance in an online environment”, Journal of Science Education and Technology (2022)
W F Fagan, A Swain, A Banerjee, H Ranade#, P Thompson#, P Staniczenko, B Flynn, J Hungerford, and S Hurwitz, “Quantifying Interdependencies in Geyser Eruptions at the Upper Geyser Basin, Yellowstone National Park”, Journal of Geophysical Research: Solid Earth, 127, e2021JB023749 (2022). (#Undergraduate mentee)
D Rappaport, A Swain, W F Fagan, R Dubayah and D C Morton, “Animal soundscapes reveal key markers of Amazon Forest degradation from fire and logging”, Proceedings of the National Academy of Sciences of the USA 119(18) (2022).
A Swain*, S Williams*, L J Di Felice* and E A Hobson “Interactions and information: Exploring task allocation in ant colonies using network analysis”, Animal Behaviour, 189, pp.69-81 (2022) (*equal contributions)
B J Klein*, A Swain*, T Byrum#, S V Scarpino and W F Fagan, “Exploring noise, degeneracy and determinism in biological networks with the einet package”, Methods in Ecology and Evolution, 13(4), pp.799-804 (2022) (*equal contributions, #Undergraduate mentee)
A Swain*, L Fussell* and W F Fagan, “Higher-order effects, continuous species interactions, and trait evolution shape microbial spatial dynamics”, Proceedings of the National Academy of Sciences of the USA 119(1) (2022). (*equal contributions)
2021 and prior
B Klein, E Hoel, A Swain, R Grebenow and M Levin, “Evolution and emergence: higher order information structure in protein interactomes across the tree of life”. Integrative Biology, 13(12), pp.283-294 (2021).
B J Klein, L Holmer, K M Smith, M M Johnson, A Swain, L Stolp, A I Teufel and A S Kleppe, "A computational exploration of resilience and evolvability of protein–protein interaction networks." Communications Biology 4(1): pp. 1-11. (2021)
E D Currano, L E Azevedo-Schmidt*, S A Maccracken* and A Swain*, “Scars on fossil leaves: An exploration of ecological patterns in plant–insect herbivore associations during the Age of Angiosperms” Palaeogeography, Palaeoclimatology, Palaeoecology: 110636 (2021) (*equal contributions)
A Swain*, T Hoffman*#, K Leyba and W F Fagan, “Exploring the evolution of perception: An agent-based approach” Frontiers in Ecology and Evolution 9, p.457. (2021) (*equal contributions, #Undergraduate mentee)
A Swain, S A Maccraken, W F Fagan and C C Labandeira, “Understanding the ecology of host plant–insect herbivore interactions in the fossil record through bipartite networks”. Paleobiology, pp. 1-22 (2021)
A Swain, M Devereux, & W F Fagan (2021). Deciphering trophic interactions in a mid-Cambrian assemblage. iScience, 102271.
J Shaw, K Wootton, E Coco, D Daems, A Gillreath-Brown, A Swain and J Dunne, “Disentangling ecological and taphonomic signals in ancient food webs”, Paleobiology, pp. 1–17. (2021)
Z Ren*, N Martyniuk*, I A Olesky*, A Swain* and S Hotaling, “Ecological stoichiometry of the mountain cryosphere”, Frontiers in Ecology and Evolution, Volume 7:360 (2019) (*equal contributions)
A Swain and W F Fagan, “Group size and decision-making: Experimental evidence for Minority Games in fish behavior”, Animal Behaviour, Volume 155, pp. 9-19 (2019)
A Swain and W F Fagan, “A mathematical model of the Warburg Effect: Effects of cell size, shape and substrate availability on growth and metabolism in bacteria”, Mathematical Biosciences and Engineering, Volume 16 (1), pp. 168-186 (2019)
A Swain and S Chatterjee. “A new formulation for determination of the Competition Coefficient in multispecies interaction for Lotka-Volterra type competition models”, Current Science, Volume 112 (9), pp. 1920-1926 (2017)
1. T Byrum, A Swain, B J Klein and W F Fagan, (2020). “einet: Effective Information and Causal Emergence”. R package version 0.1.0. CRAN link
2. J Demers, A Swain, T Byrum, S Bewick and W F Fagan (2020). "mosqcontrol: Mosquito Control Resource Optimization". R Package version 0.1.0. CRAN link
3. C Schwantes, J Demers, S Bewick, A Swain, and W F Fagan (2019). “Mosquito Control Aid web app”. https://collin-schwantes.shinyapps.io/MosquitoApp/